Okay, here's a new version of the upgrader that should fix the Bounty Hunter ships problem.
Operation: No Mod Still Not Left Behind (0.14.2 Mod Upgrader)
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Walt So vanilla shields have a penetration resistance of 25?
Drakador_Chaos So vanilla shields have a penetration resistance of 25?
Correct.
Walt
Bounty hunter seems to be working fine now, shield penetration would be nice (also, interesting idea to have shields having penetration resistance) (suppose I could try and solve it via "can survive shields" until then), thanks for the help Walt!
Walt I ran the 0.14.0 Upgrader on Cosmoteer Plus, and then after that, i ran the 0.14.2 Upgrader on the upgraded version. It seemed to be working, until i crashed. I checked all the mods and i know that Cosmoteer Plus was the cause of the crash.
RedAndCosmoteer If you can tell me how to reproduce the crash, then I can look into it.
Walt I simply ran the mod upgrader (the original one) on cosmoteer plus. Then, i renamed the upgraded file (cosmoteer plus_upgraded) to what it was before the upgrade. Then, i ran the 0.14.2 upgrader on it.
And then, run cosmoteer with only the upgraded mod loaded.
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Walt
Hi Walt. Using the Mod Upgrade, Would I be able to down grade a mod like Drones++ (14.2) down to 14.1 ?
I'm waiting until Blood Cult is fully compatible with 14.2 be for downloading the latest version of this fantastic game
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Walt RedAndCosmoteer
Well, so I tried the Cosmoteer Plus thing with a 14.1 compatible version, and got the following error:
System.Exception: Error loading mod: Cosmoteer Plus ---> System.InvalidOperationException: The node at path '<[user's home folder]\Desktop\14.2\Cosmoteer\Data\ships\terran\ion_beam_emitter\ion_beam_emitter.txt>/Part/Components/Weapon/Emitter' must be a {} "group" node or file to use an Overrides action on it.
bei Cosmoteer.Mods.ModOverridesAction.ApplyAction(OTFile rulesFile) in C:\Users\Walt\Documents\Code\Cosmoteer\Source\Mods\ModOverridesAction.cs:Zeile 22.
bei Cosmoteer.Mods.ModInfo.ApplyPreLoadMods(OTFile rulesFile) in C:\Users\Walt\Documents\Code\Cosmoteer\Source\Mods\ModInfo.cs:Zeile 70.
Not use if that helps the situation, I can put up a download for the 14.1 version if you need it, though technically it´s not my mod.
In retrospect I feel like the issue is not the parts of the mod itself but the fact that it tries to override the range of vanilla weapons, think I might try to remove the range-changes and see if it works.
RedAndCosmoteer Walt
So I commented the range increases out which indeed fixed one of the errors however now a different error comes up:
Halfling.Serialization.DeserializeException: Deserialization from source "<[user's home folder]\Desktop\14.2\Cosmoteer\Data\rules.txt>" failed. ---> System.Reflection.TargetInvocationException: Ein Aufrufziel hat einen Ausnahmefehler verursacht. ---> Halfling.Serialization.DeserializeException: Deserialization from source "<[user's home folder]\Desktop\14.2\Cosmoteer\Data\ships\terran\terran.txt>/Terran" failed. ---> System.Reflection.TargetInvocationException: Ein Aufrufziel hat einen Ausnahmefehler verursacht. ---> Halfling.Serialization.DeserializeException: Deserialization from source "<[user's home folder]\Documents\My Games\Cosmoteer\Mods\jfjohnny5.cosmeteer_plus_0.27.5_upgraded\Infrared_Laser\Infrared_Laser.txt>/Part" failed. ---> System.Reflection.TargetInvocationException: Ein Aufrufziel hat einen Ausnahmefehler verursacht. ---> Halfling.Serialization.DeserializeException: Unable to find node at path "Delay" relative to "<[user's home folder]\Documents\My Games\Cosmoteer\Mods\jfjohnny5.cosmeteer_plus_0.27.5_upgraded\Infrared_Laser\Infrared_Laser.txt>/Part/Components/FireEffect/MediaEffects/1".
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Drakador_Chaos It appears to be the infrared laser that crashes the game..
(yes, i'm captain obvious.)
RedAndCosmoteer
I will start commenting things out error by error to see which things exactly are broken, though it might be cosmoteer plus will need a rework.
When I ran the upgrader, my Anti-Virus went mental and quick scanned my computer for viruses while sending the Upgrader.exe to the main server to deep scan it 
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Drakador_Chaos Any progress?
Yes ik i'm impatient
RedAndCosmoteer Didn´t get to do much since then.
13 days later
Drakador_Chaos Still no progress, Drak?
RedAndCosmoteer Once I get to it I will notify you.
Drakador_Chaos Thank you Drak.