RedAndCosmoteer
I think your modules ans some other things could be improved.
The main things you should focus on are:
More firepower: Remove some electrobolts and replace them with some more damaging weapons.
Improved supply: I see you use modules, which is great. Yet your modules could be much more effective. Try to match the amount of cannons with the amount of factories: 1 factory = 1 Large cannon or 2-4 small cannons, (depending on if you want them to fire non-stop). Move your reactors so they touch the shields, (1 reactor for 1-2 shields). Your ion beams also need a better power supply (also, one lacks doors).
Minor things you should take a look at:
Missile modules: Right now your missiles and engines are supplied by the same crew, make missiles independent for a much better missile rate and better thruster powering.
Control room placement. Right now your two control rooms are as good as one, since they sit next to the same reactor. A tactical shot takes out both. Move them to different places, and make sure it's difficult to take out both.
Training:
Try improving your combat against these two. You don't need to beat them yet, just make sure to get that damage up!