Shields blocking TB is fine imho since you can switch off shields with EMP or EB.
TB is more an additional tool now then the main weapon - i like that.
@Walt Will there be a RC4 with changes to missiles?
My impression is players are not rly using missile ships "seriously" in PVP because they lose so many missiles at launch - so they are considered to be partially broken. (like described in my RC2 comment.)
Or are we expected to build/rebuild all missile launchers from now on differently?