- Edited
Zephyr One SHIELD FLAGSHIP
(Spoilers from Agents of Shield ahead)
Also known as Z1, is a mobile airborne command plane designed by Leo Fitz for S.H.I.E.L.D., and its main aircraft and mobile headquarters, used as a replacement for the Bus after it was destroyed in the Attack on the Arctic HYDRA Research Facility. Upon being upgraded, it was used by S.H.I.E.L.D. to fly through space and travel through time.
(Not really useful for now)
Compartments
Landing Bay: Zephyr One has been designed to incorporate a landing bay for Quinjet's on the dorsal surface and has been observed to allow at least two to land at any given time.
Command Bridge: The bridge is located at the front of the ship, it has several metal railings, the bridge also has multiple control stations where crew members control and manage the ship's systems and panels on the walls which displays information on targets, System info, maps, etc. At the front of the bridge behind glass doors is where the pilot sits and flies the ship (when autopilot is not engaged).
Containment Module: The plane has been adapted to carry Containment Modules on board, that can be sent to specific locations indicated by a tracking device planted on the ground then use jets on the bottom to fly back up to the plane. Aside from some windows, the interior of these pods is made from "poly-tectic adaptive materials" that can withstand some superhuman powers and are customized by use.
Loading Bay: Zephyr one has a large bay area which is used for loading and offloading cargo, land vehicles such as S.H.I.E.L.D. SUV and entry/exit. This room is also used for the storage of the Containment Module.
Weapons Systems
ASM missiles: Zephyr One has a vast array of missiles that leveled the HYDRA Castle, destroying most of the standing structure.
Stealth Systems
Retro-Reflective Panels: Zephyr One has implemented the same cloaking technology as other S.H.I.E.L.D. aircraft.
Flight Systems
-Autopilot
-Space Travel
-Time Travel
-Teleportation
The Zephyr One gained the ability to travel through time thanks to upgrades Jemma Simmons installed on the Phase Harmonic Jump Drive. The Zephyr is able to travel through time by traveling on "tides" that allow them to follow after ships that recently traveled through time. However, the Zephyr can only stay in its new time period for so long, and after a predetermined amount of time, will inevitably return to its original time.
Source:
https://marvelcinematicuniverse.fandom.com/wiki/Zephyr_One#Upgraded
Use and modify as you want, but give me some credit 
To do list
-Make it work
-Make a Quinjet
-Better Shape and Details
-Maybe a custom mod to make it work properly, but im not good at modding
-After finish this: Helicarrier
